YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ITR2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	107	0.94
Transmembrane Helix	108	128	0.88
Non-Cytoplasmic	129	155	0.87
Transmembrane Helix	156	176	0.88
Cytoplasmic	177	184	0.74
Transmembrane Helix	185	203	0.94
Non-Cytoplasmic	204	209	0.76
Transmembrane Helix	210	231	0.91
Cytoplasmic	232	241	0.86
Transmembrane Helix	242	264	0.86
Non-Cytoplasmic	265	272	0.75
Transmembrane Helix	273	292	0.94
Cytoplasmic	293	359	0.95
Transmembrane Helix	360	378	0.89
Non-Cytoplasmic	379	398	0.86
Transmembrane Helix	399	420	0.93
Cytoplasmic	421	427	0.90
Transmembrane Helix	428	450	0.95
Non-Cytoplasmic	451	468	0.88
Transmembrane Helix	469	491	0.90
Cytoplasmic	492	505	0.91
Transmembrane Helix	506	530	0.83
Non-Cytoplasmic	531	536	0.79
Transmembrane Helix	537	557	0.91
Cytoplasmic	558	612	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEMKNSTAA SSRWTKSRLS HFFPSYTNSS GMGAASTDQS STQGEELHHR KHCEEDNDGQ  60
   61 KPKKSPVSTS TMQIKSRQDE DEDDGRIVIK PVNDEDDTSV IITFNQSISP FIITLTFVAS 120
  121 ISGFMFGYDT GYISSALISI NRDLDNKVLT YGEKELITAA TSLGALITSV GAGTAADVFG 180
  181 RRPCLMFSNL MFLIGAILQI TAHKFWQMAA GRLIMGFGVG IGSLISPLFI SEIAPKMIRG 240
  241 RLTVINSLWL TGGQLIAYGC GAGLNHVKNG WRILVGLSLI PTVLQFSFFC FLPDTPRYYV 300
  301 MKGDLKRAKM VLKRSYVNTE DEIIDQKVEE LSSLNQSIPG KNPITKFWNM VKELHTVPSN 360
  361 FRALIIGCGL QAIQQFTGWN SLMYFSGTIF ETVGFKNSSA VSIIVSGTNF VFTLIAFFCI 420
  421 DKIGRRYILL IGLPGMTVAL VICAIAFHFL GIKFNGADAV VASDGFSSWG IVIIVFIIVY 480
  481 AAFYALGIGT VPWQQSELFP QNVRGVGTSY ATATNWAGSL VIASTFLTML QNITPTGTFS 540
  541 FFAGVACLST IFCYFCYPEL SGLELEEVQT ILKDGFNIKA SKALAKKRKQ QVAEGAAHHK 600
  601 LKFEPTQEIV ES