YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68303942
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMAGRAHGHR NRLRRLIPRL LLLLVAVYAA SFAIYLLLQS HSHHQSPPDP TPRTEARDGV  60
   61 LAPSSSQKPW PRLPSFLPWV SSAVPPPPLH TCEAYFGNGF SRRVDVLPAG RGSGGGGWFR 120
  121 CHHSETLGSS ICEGARVRLD PALIAMSRGG EPLEQVMGRA EEEELPKYEP GALQVEGPAA 180
  181 GMPVPLVDAG FLNDYVPTGG IGMHTMRALL ESTRVVPPGE LHCSQWVEEP TLLVTRFEYA 240
  241 NLFHTITDWY SAYVSSRVTN LPNRPNVVFL DGHCKAQLEE TWEALFSSVT YAKNFTVPVC 300
  301 FRHAILSPLG YETAMFKGLS ESFSCEGASV DSLREKPDYE KTARLSEFGE MIVASFDLLQ 360
  361 DDIMSSKKSN GLNVLFVRRE DYLAHPRHSG KVESRLSNEQ EVYDAIDKWA QGLKCKVNVV 420
  421 NGLFAHMTMK EQLRAILEAS VVIGAHGAGL THLVSATPDT KVLEIISSMY RRPHFALISH 480
  481 WKSLEYHAIN LPGSFARVTD VINELRKILE GLGC

Type	Start	End	Confidence
Cytoplasmic	1	19	0.76
Transmembrane Helix	20	38	0.82
Non-Cytoplasmic	39	514	0.99