YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YOL073C
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMEPPVGLT AMPVTKLAMI TTLVVPLVAS IASYKHIFLL QYDPFLQTYH QYYRLLIFQF  60
   61 CAINESDTVI LALIWYLFRH LERLLGSHKY LTLIVLSWAY TTLGIWGLNL IWNAFIGQYK 120
  121 WLQWNNFSTG SLPIVLSLVH FYKEYTPQIY EWNIRLLGPR GGASSHNDNK REDKSAVEWK 180
  181 INDQFLLNGL ILLLILNQGF AGILCGFISW MCGIFIDKGL LPGLDHWRIP FVSYFISQGP 240
  241 PTRANVAIAA NAATNTAAAR ATVEAATAAT GNGNTGNSGP TSLPLRGSST TPTNTSSAGD 300
  301 DEPGADEPAR PLGVQFLDTF RR

Type	Start	End	Confidence
Cytoplasmic	1	16	0.83
Transmembrane Helix	17	38	0.88
Non-Cytoplasmic	39	54	0.90
Transmembrane Helix	55	78	0.92
Cytoplasmic	79	89	0.87
Transmembrane Helix	90	116	0.80
Non-Cytoplasmic	117	188	0.76
Transmembrane Helix	189	214	0.81
Cytoplasmic	215	322	0.79