YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YIDC_CUPNH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.49
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIKRTILWV IFSMSLVLLY DNWQRSQGHA SMFFPSTTQQ AASAPAASGA AAQGDVPKAN  60
   61 VAPGAAGTAA PAAPQAAAQP TGEKVVVTTD TVRAEIDTAG GIVSRLELLK EHEKDGKPVV 120
  121 LFERDNVRTY MARSGLIGGD LPNHTTVFTA APGPRTLDGA EQLEVALTAE KNGVKLVKTY 180
  181 VFRKGSYVVD TKFAVTNAGA APVSPTLYLE LARDGSKVEQ SQFYSTFTGP AVYTDADKYH 240
  241 KIDFEDIAKG KATVPAAANN GWVAMVQHYF ASAWIPQTGK EHSFYVQQID PHLYRVGVQQ 300
  301 PLGELAPGAT VTTDARLFAG PQEEHMLEKI APGLELVKDY GWLTILAKPL FWLLEKLHGF 360
  361 LGNWGWSIIA LTVLIKLVFF PLSAASYKSM GKMKDLQPRM TSIRERYKND PQKMNQEMMG 420
  421 LYKTEKVNPL GGCLPIVIQI PVFIALYWVL LSSVEMRGAP WLGWIHDLSV PDPFYILPIV 480
  481 MAVSMFVQTK LNPTPPDPVQ AKVMMIMPLV FSVMFFFFPA GLVLYWVVNN ILSIAQQWQI 540
  541 NRMLGKGKAA VVAKS

Type	Start	End	Confidence
Signal Peptide	1	23	0.47
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	359	0.93
Transmembrane Helix	360	380	0.90
Cytoplasmic	381	427	0.91
Transmembrane Helix	428	451	0.89
Non-Cytoplasmic	452	470	0.88
Transmembrane Helix	471	491	0.83
Cytoplasmic	492	504	0.83
Transmembrane Helix	505	528	0.89
Non-Cytoplasmic	529	555	0.91