YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113869643, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.99
Transmembrane Helix	7	27	0.93
Non-Cytoplasmic	28	32	0.83
Transmembrane Helix	33	52	0.95
Cytoplasmic	53	87	0.97
Transmembrane Helix	88	109	0.91
Non-Cytoplasmic	110	116	0.80
Transmembrane Helix	117	139	0.92
Cytoplasmic	140	159	0.91
Transmembrane Helix	160	182	0.95
Non-Cytoplasmic	183	190	0.80
Transmembrane Helix	191	210	0.95
Cytoplasmic	211	220	0.73
Transmembrane Helix	221	240	0.92
Non-Cytoplasmic	241	254	0.94
Transmembrane Helix	255	276	0.93
Cytoplasmic	277	283	0.87
Transmembrane Helix	284	303	0.94
Non-Cytoplasmic	304	324	0.87
Transmembrane Helix	325	345	0.94
Cytoplasmic	346	361	0.90
Transmembrane Helix	362	385	0.91
Non-Cytoplasmic	386	405	0.79
Transmembrane Helix	406	424	0.84
Cytoplasmic	425	433	0.86
Transmembrane Helix	434	454	0.88
Non-Cytoplasmic	455	463	0.81
Transmembrane Helix	464	486	0.88
Cytoplasmic	487	508	0.91
Transmembrane Helix	509	528	0.95
Non-Cytoplasmic	529	544	0.83
Transmembrane Helix	545	566	0.91
Cytoplasmic	567	572	0.92
Transmembrane Helix	573	593	0.93
Non-Cytoplasmic	594	639	0.93
Transmembrane Helix	640	660	0.94
Cytoplasmic	661	690	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRIGEHLVW LAVAVLGAFA FGTVALARGE AVSALWIVVA ALCIYLIAYR YYSRFIADKV  60
   61 MQLDPKRMTP AWRHNDGLDY VPTNKAVLFG HHFAAIAGAG PLVGPVLAAQ MGYMPGMLWL 120
  121 LAGVVFAGAV QDFMVLFIST RRDGRSLGDL VKSEMGTIPG MIALFGCFMI MVIILAVLAL 180
  181 IVVKALADSP WGTFTVAVTI PIALFMGIYT RYIRPGRIGE VSVIGFVLLM LAIIGGQYVH 240
  241 ESAVLAPLFT YDGKALTWML IIYGFIAAVL PVWLLLAPRD YLSTFLKIGT IIALAVGILI 300
  301 VAPDLKMPAF TQFAQGGGPV WSGNLFPFLF ITIACGAVSG FHALISSGTT PKLLENETHA 360
  361 RFIGYGAMLA ESFVAIMALV AASVIEPGVY FAMNSPAAVI GTTPEAVAHA VSTWGFVITP 420
  421 DVLVQTAKDV GENTILSRAG GAPTLAVGIA HILHQVVGGQ AMMAFWYHFA ILFEALFILT 480
  481 AVDAGTRAGR FMLQDLLGSF IPSMRKTDSL VANLTATALC VAAWGYFLYQ GVVDPLGGIN 540
  541 TLWPLFGISN QMLAAVALVL GTCVLVKMKR GQYAWVTLVP TVWLLICTLT AGWQKLFHAD 600
  601 PKVSFLTHAA KFSAAIAEGK VLAPAKSMEQ MHRIVFNDYL DAGLCALFML VVLSIVFYGF 660
  661 KTALQARAAK RPTDKETPFE PLPGAASAQS