YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TAT2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	86	0.99
Transmembrane Helix	87	108	0.93
Non-Cytoplasmic	109	115	0.79
Transmembrane Helix	116	135	0.85
Cytoplasmic	136	158	0.71
Transmembrane Helix	159	180	0.78
Non-Cytoplasmic	181	195	0.76
Transmembrane Helix	196	214	0.96
Cytoplasmic	215	225	0.75
Transmembrane Helix	226	247	0.91
Non-Cytoplasmic	248	266	0.85
Transmembrane Helix	267	290	0.83
Cytoplasmic	291	306	0.95
Transmembrane Helix	307	328	0.93
Non-Cytoplasmic	329	358	0.91
Transmembrane Helix	359	384	0.80
Cytoplasmic	385	401	0.91
Transmembrane Helix	402	422	0.91
Non-Cytoplasmic	423	432	0.72
Transmembrane Helix	433	454	0.92
Cytoplasmic	455	474	0.87
Transmembrane Helix	475	497	0.90
Non-Cytoplasmic	498	514	0.89
Transmembrane Helix	515	537	0.91
Cytoplasmic	538	592	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEDFISSVK RSNEELKERK SNFGFVEYKS KQLTSSSSHN SNSSHHDDDN QHGKRNIFQR  60
   61 CVDSFKSPLD GSFDTSNLKR TLKPRHLIMI AIGGSIGTGL FVGSGKAIAE GGPLGVVIGW 120
  121 AIAGSQIIGT IHGLGEITVR FPVVGAFANY GTRFLDPSIS FVVSTIYVLQ WFFVLPLEII 180
  181 AAAMTVQYWN SSIDPVIWVA IFYAVIVSIN LFGVRGFGEA EFAFSTIKAI TVCGFIILCV 240
  241 VLICGGGPDH EFIGAKYWHD PGCLANGFPG VLSVLVVASY SLGGIEMTCL ASGETDPKGL 300
  301 PSAIKQVFWR ILFFFLISLT LVGFLVPYTN QNLLGGSSVD NSPFVIAIKL HHIKALPSIV 360
  361 NAVILISVLS VGNSCIFASS RTLCSMAHQG LIPWWFGYID RAGRPLVGIM ANSLFGLLAF 420
  421 LVKSGSMSEV FNWLMAIAGL ATCIVWLSIN LSHIRFRLAM KAQGKSLDEL EFVSAVGIWG 480
  481 SAYSALINCL ILIAQFYCSL WPIGGWTSGK ERAKIFFQNY LCALIMLFIF IVHKIYYKCQ 540
  541 TGKWWGVKAL KDIDLETDRK DIDIEIVKQE IAEKKMYLDS RPWYVRQFHF WC