YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CSI2
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.84
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLPEISIWK VILLLHLFAL QEFQLVSAAN LPSLSSSTKA ADSSSKGSSS AKTTTSLGKS  60
   61 SVTSKDVSSS HNVTSSTKMP KITTSASTSL YTNSSLWSNN SVISTSSITP SSVYIPVTDG 120
  121 NKFLYQAHHP NGTVFIAFAG CLGAILLSLT GAWIALNIKS WRSARKENKL RNLENQYQHD 180
  181 PFYFQTNIND DESETSSHSD DSDISEKVLK NNSSRMSLYT LGSTSVLNLL NNKTDANDNF 240
  241 RSSMFISPTE ILQSDANNSN TWSQSNESAI YDSLSSTPRE PGATQILGKF TDSTNPFNYT 300
  301 SYNLSPDSED RSTPKSNVSQ GKVKKYRPPS VHLDQLLDGK E

Type	Start	End	Confidence
Signal Peptide	1	28	0.87
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	133	0.96
Transmembrane Helix	134	156	0.92
Cytoplasmic	157	341	0.94