YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COS10
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEEIRLLSS KGLETHSSFC LPEDIFRNRL TWLCSEIRNS GFWIWSLSWL PLAVWWGMAS  60
   61 TWFYPLLTSV VLILALIAIL PVVQIQYSKY TLSNQLTQLS KEIIKSAPGA YSADWDAVAI 120
  121 HFNSYLYENK AWKTAHFFFN GTDCQEAFRK TILEPAVLRR QNEDPRFSSI EILVPYTEDA 180
  181 VQVYFTKVNA QWRLIHGKKE CKLTMLENVK LPKETYRCKL AWSCQRIRIS FSPLDFLPDM 240
  241 SDFFICANLS PACLVSYWLI DIFFRMIDDF QNIRPKSMKV DDKMQYLSDI INEQGASPEK 300
  301 WDTIARKTNT RLFEKRVWKN EEFFFDGTDC QAFFERNFSS LLFSKKSASP RSLNVELWKY 360
  361 IQEAQLSCNY EPLP

Type	Start	End	Confidence
Cytoplasmic	1	38	0.89
Transmembrane Helix	39	59	0.81
Non-Cytoplasmic	60	63	0.64
Transmembrane Helix	64	85	0.88
Cytoplasmic	86	374	0.71