YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YNR062C
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIAQDRGIV FKLLSIYRAA AGIFMALAQL IVIFFGYCDF KIKGYRIASY NAPTFASSFI  60
   61 ILAVCLLLVV VLENPEVKVT NSENSLFSAL KQFFRVERKK LISCLILLWS MFLSSFIMSE 120
  121 VVYFMPLFLT LHVNWDTKFQ GIAFMVASIL GVTGSYFAPK LINVGCSCGR AKDGGLEESD 180
  181 TTGSETVEVK KKDSLYSGQV FLSIFALFVS LLGQAFMIGA SEALKHKSMP PTNSGIFFSA 240
  241 GMSITLLGYN FLASSIPALF SMYIDPKLKV QLMPSIGAIS GIGKLVAPIV LAALYGTRLG 300
  301 LSIAVGFGMI LVAVSIPPLI WLRKKRC

Type	Start	End	Confidence
Cytoplasmic	1	13	0.96
Transmembrane Helix	14	37	0.87
Non-Cytoplasmic	38	51	0.85
Transmembrane Helix	52	72	0.92
Cytoplasmic	73	100	0.97
Transmembrane Helix	101	124	0.87
Non-Cytoplasmic	125	138	0.86
Transmembrane Helix	139	162	0.85
Cytoplasmic	163	199	0.94
Transmembrane Helix	200	218	0.96
Non-Cytoplasmic	219	235	0.84
Transmembrane Helix	236	260	0.82
Cytoplasmic	261	271	0.84
Transmembrane Helix	272	294	0.90
Non-Cytoplasmic	295	300	0.76
Transmembrane Helix	301	322	0.94
Cytoplasmic	323	327	0.96