YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HOL1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	63	0.88
Transmembrane Helix	64	86	0.78
Non-Cytoplasmic	87	103	0.71
Transmembrane Helix	104	124	0.88
Cytoplasmic	125	130	0.66
Transmembrane Helix	131	150	0.92
Non-Cytoplasmic	151	156	0.67
Transmembrane Helix	157	177	0.62
Cytoplasmic	178	189	0.76
Transmembrane Helix	190	212	0.90
Non-Cytoplasmic	213	219	0.78
Transmembrane Helix	220	240	0.91
Cytoplasmic	241	360	0.97
Transmembrane Helix	361	383	0.80
Non-Cytoplasmic	384	407	0.89
Transmembrane Helix	408	433	0.85
Cytoplasmic	434	448	0.89
Transmembrane Helix	449	469	0.96
Non-Cytoplasmic	470	477	0.79
Transmembrane Helix	478	501	0.88
Cytoplasmic	502	512	0.81
Transmembrane Helix	513	536	0.85
Non-Cytoplasmic	537	543	0.86
Transmembrane Helix	544	565	0.95
Cytoplasmic	566	586	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKYTNRDHP DYIPGTFNIY SSQNLENGII YESKLKKTSS GVVLIPQPSY SPNDPLNWSS  60
   61 WRKLAHFGLM AFITAFTAAT SNDAGAAQDS LNEIYGISYD SMNTGAGVLF LGIGWSTLFL 120
  121 APFANLYGRK ITYIVCTTLG LFGALWFALA KRTSDTIWSQ LFVGISESCA EAQVQLSLSD 180
  181 IFFQHQLGSV LTVYIMCTSI GTFLGPLIAG YISAFTNFRW VGWVAVIISG GLLITIIFGC 240
  241 EETYFDRGQY MTPLTSCQSG YEDGTTLQNS DNTAVSRRKR HLDAKLSTPG AMGEKGVDLS 300
  301 ETAEFEVNNE EEVTIPETRE LIDGSKEHLK PYPKRVAILT KATNLKGYGF KQYFKYLKIN 360
  361 LRMFLFPPVW LSGMFWGIQD VFLTFYLTTQ ESAYYEPPWN YSDFGVAIMN VPTLIGAVIG 420
  421 CICAGIVSDY FVLWMARHNR GILEAEFRLY FSIATAIIGP AGLLMFGIGT ARQWPWQAIY 480
  481 VGLGFVGFAW GCSGDIAMAY LMDCYPDMVL EGMVCTAIIN NTISCIFTFT CSDWLAASGT 540
  541 ENTYIALAVI NFGITAFALP MYYYGKRIRL WTKRWYLQSV NLRDGV