YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|190408961
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNMAAKNQF KGSSFTLAQL IEEVGRNGGK KPVFQYKVPR SIRWASTALA VVFLTYGAAY  60
   61 TDMSWRTARE VYGNATEEEK HSPWFKCKTF GPVALGVLPV ILAAATKHVT SRLVTEMKYL 120
  121 PPLKNSTVPR CQLTRRTYLL GRPVSITREI NELSKNKATK IFTGVGSQGM EDKATFVFFT 180
  181 VDEKAPSFFN KFYIFSRSGS VVKNDARILD CFFNSVAENK LLNRSILTQI LSHTSAKTLF 240
  241 HSGNSRSSIK NIVKPK

Type	Start	End	Confidence
Cytoplasmic	1	40	0.79
Transmembrane Helix	41	60	0.77
Non-Cytoplasmic	61	89	0.85
Transmembrane Helix	90	110	0.61
Cytoplasmic	111	256	0.61