YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113527602, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGNAHDHVS PFRMEIALAL KAVILGIVEG LTEFLPISST GHLILAGQLL DFNDEKGKIF  60
   61 EIVIQFGAIL AVCWEFRARI GNVVRGLRAE PLAQRFAANV VIASVPAIVL AFIFGKWIKA 120
  121 HLFNPISVAL AFIVGGVVIL LAEWRDARRG TVSHPQGNAL LEAAKAGAPR IESVDDLNWR 180
  181 DALKVGLAQC FALVPGTSRS GATIIGGMLF GLSRQVATEF SFFLAIPVIF GATVYELYKA 240
  241 RALLNGDDLG IFAVGFVFAF LSAFLCVRWL LRFVATHDFK PFAWYRIAFG IVVLLTAYSG 300
  301 LVSWHA

Type	Start	End	Confidence
Cytoplasmic	1	17	0.93
Transmembrane Helix	18	38	0.84
Non-Cytoplasmic	39	58	0.77
Transmembrane Helix	59	78	0.86
Cytoplasmic	79	95	0.88
Transmembrane Helix	96	115	0.95
Non-Cytoplasmic	116	121	0.78
Transmembrane Helix	122	142	0.93
Cytoplasmic	143	215	0.89
Transmembrane Helix	216	238	0.79
Non-Cytoplasmic	239	248	0.80
Transmembrane Helix	249	271	0.93
Cytoplasmic	272	281	0.82
Transmembrane Helix	282	302	0.95
Non-Cytoplasmic	303	306	0.68