YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PHO91
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	387	0.83
Transmembrane Helix	388	408	0.68
Cytoplasmic	409	426	0.77
Transmembrane Helix	427	448	0.88
Non-Cytoplasmic	449	469	0.77
Transmembrane Helix	470	494	0.84
Cytoplasmic	495	510	0.83
Transmembrane Helix	511	534	0.89
Non-Cytoplasmic	535	562	0.76
Transmembrane Helix	563	586	0.83
Cytoplasmic	587	598	0.88
Transmembrane Helix	599	621	0.89
Non-Cytoplasmic	622	640	0.91
Transmembrane Helix	641	664	0.91
Cytoplasmic	665	682	0.94
Transmembrane Helix	683	702	0.94
Non-Cytoplasmic	703	708	0.75
Transmembrane Helix	709	730	0.90
Cytoplasmic	731	737	0.80
Transmembrane Helix	738	758	0.89
Non-Cytoplasmic	759	777	0.82
Transmembrane Helix	778	802	0.90
Cytoplasmic	803	823	0.77
Transmembrane Helix	824	844	0.92
Non-Cytoplasmic	845	869	0.84
Transmembrane Helix	870	889	0.91
Cytoplasmic	890	894	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFSHSLQFN SVPEWSTKYL AYSQLKKLIY SLQKDKLYSN NKHHVVEPHD ANDENLPLLA  60
   61 DASPDDQFYI SKFVAALNQE LKKIDKFYIS QETGLIANYN ELKDDVMELE NTNKATQLFN 120
  121 QQQQHQLQSV ARNRKSKSQQ RQRRFSSVSS TDSNPSLTDM SIDSAPVIHT QVSNTTNNGN 180
  181 SMQNLASASV SLSNSNPVYL SPFTQHRLSL KKRLISIYTQ LSELKDFIEL NQTGFSKICK 240
  241 KFDKSLNTNL KQNYLNYIKF HSHVFNPATI NRIQHHITET ILTYASLNKG TRRPSNTFNL 300
  301 DADRINNDEN SSGNEEDEDG NRQEVLDFQD AERELSSHLR DHVVWERNTV WKDMMNLERK 360
  361 YQSAKTDNKK FSKLSSSQLR PNANITESMA MSSGGAGIIA PSTDSLTFRE LMHLPPKQWL 420
  421 QFIMGQTSLL KFLLITSCFI ALLTFNLTPF TQDSLQKNCF AILIYASLLW ATETIPLFVT 480
  481 SLMIPLLIVV FPVIKDPITS QPMSPRDSSQ FILSTMWSSV IMLLLGGFTL AAALSKYNIA 540
  541 KVLSTHILAS AGTNPHFILL TNMFVALFVS MWVSNVAAPV LCYSIVQPLL RTLPRNCSYA 600
  601 KALILGIALA SNIGGMSSPI ASPQNIFSIG IMDPSPSWAE WFMIALPVCF ICVMAIWVLL 660
  661 IITFPPEPNV KILQLHPSRD PFTLKQWFVT LVCIITIVLW CLSNQISGIF GEMGIISIIP 720
  721 IVVFFGTGLL TSDDFNNFMW TIVVLAMGGT TLGKAVSSSG LLSTMAQLIK AQVEHEPIFI 780
  781 IVLIFGLVIL VMATFVSHTV AAMIIVPLMS EIGSNLPSGD HSRLLIVIAA LLCSSAMGLP 840
  841 TSGFPNVTAI SMIDEVGDRY LTVGTFITRG VPASLLSYAA IVTVGYGILK VMGF