YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|207341596
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDREQSSGN TAFENPKALD SSEGEFISEN NDQSRHSQES ICKIYTAGKN NEYIYIGRQK  60
   61 FLRDDLFEAF GGTLNPGLAP APVHKFANPA PLGLSGFALT TFVLSMFNAR AQGITIPNVV 120
  121 VGCAMFYGGL VQLIAGIWEI ALENTFGGTA LCSFGGFWLS FGAIYIPWFG ILDAYKDKES 180
  181 DLGNALGFYL LGWALFTFGL SVCTMKSTIM FFALFFLLAV TFLLLSIANF TGEVGVTRAG 240
  241 GVLGVIVAFI AWYNAYAGIA TRQNSYIMVH PFALPSNDKV FF

Type	Start	End	Confidence
Cytoplasmic	1	85	0.80
Transmembrane Helix	86	107	0.76
Non-Cytoplasmic	108	113	0.47
Transmembrane Helix	114	138	0.84
Cytoplasmic	139	145	0.53
Transmembrane Helix	146	169	0.87
Non-Cytoplasmic	170	181	0.59
Transmembrane Helix	182	203	0.86
Cytoplasmic	204	208	0.53
Transmembrane Helix	209	230	0.90
Non-Cytoplasmic	231	235	0.52
Transmembrane Helix	236	258	0.86
Cytoplasmic	259	282	0.63