YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113868174, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVLLTQFVN LLGAVLLILA FAMISQRRIL SLINLFTLQG ATLALATAIV GYVTGQPHLY  60
   61 LSAGLTAILK ALLIPYLLHR VIDRLRIRRD VETLINIPTT MLIGILVVIF AFNLTMPISR 120
  121 LSLKLASGTL GIALACVLLS FLMMITRSKA VPQVIGFLAM ENGLFFAATA ATYGMPMVVE 180
  181 LGIALDVLIG VLILGVFMFQ IREQFDSLDI RHLEKLKED

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.84
Transmembrane Helix	6	24	0.92
Cytoplasmic	25	31	0.80
Transmembrane Helix	32	53	0.90
Non-Cytoplasmic	54	58	0.81
Transmembrane Helix	59	79	0.92
Cytoplasmic	80	93	0.88
Transmembrane Helix	94	115	0.91
Non-Cytoplasmic	116	124	0.73
Transmembrane Helix	125	145	0.93
Cytoplasmic	146	153	0.83
Transmembrane Helix	154	174	0.92
Non-Cytoplasmic	175	181	0.75
Transmembrane Helix	182	201	0.95
Cytoplasmic	202	219	0.97