YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|190409269
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGPPPPYEE QSSHLYGQPA SSQDGNAFIP EDFKYSTVVI SCEPIIRQRF MHKVYSLLSC  60
   61 QLLASLSFCY WASVSTSLQN FIMSHIALFY ICMVVSLVSC IWLAVSPRPE DYEASVPEPL 120
  121 LTGSSEEPAQ EQRRLPWYVL SSYKQKLTLL SIFTLSEAYC LSLVTLAYDK DTVLSALLIT 180
  181 TIVVVGVSLT ALSERFENVL NSATSIYYWL NWGLWIMIGM GLTALLFGWN THSSKFNLLY 240
  241 GWLGAILFTA YLFIDTQLIF RKVYPDEEVR CAMMLYLDIV NLFLSILRIL ANSNDDN

Type	Start	End	Confidence
Cytoplasmic	1	53	0.99
Transmembrane Helix	54	74	0.94
Non-Cytoplasmic	75	81	0.86
Transmembrane Helix	82	105	0.90
Cytoplasmic	106	146	0.97
Transmembrane Helix	147	167	0.90
Non-Cytoplasmic	168	172	0.82
Transmembrane Helix	173	193	0.92
Cytoplasmic	194	207	0.84
Transmembrane Helix	208	229	0.92
Non-Cytoplasmic	230	237	0.81
Transmembrane Helix	238	259	0.89
Cytoplasmic	260	271	0.84
Transmembrane Helix	272	291	0.78
Non-Cytoplasmic	292	297	0.76