YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ERG24
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSALNPRTT EFEFGGLIGA LGISIGLPVF TIILNQMIRP DYFIKGFFQN FDIVELWNGI  60
   61 KPLRYYLGNR ELWTVYCLWY GILAVLDVIL PGRVMKGVQL RDGSKLSYKI NGIAMSTTLV 120
  121 LVLAIRWKLT DGQLPELQYL YENHVSLCII SILFSFFLAT YCYVASFIPL IFKKNGNGKR 180
  181 EKILALGGNS GNIIYDWFIG RELNPRLGPL DIKMFSELRP GMLLWLLINL SCLHHHYLKT 240
  241 GKINDALVLV NFLQGFYIFD GVLNEEGVLT MMDITTDGFG FMLAFGDLSL VPFTYSLQAR 300
  301 YLSVSPVELG WVKVVGILAI MFLGFHIFHS ANKQKSEFRQ GKLENLKSIQ TKRGTKLLCD 360
  361 GWWAKSQHIN YFGDWLISLS WCLATWFQTP LTYYYSLYFA TLLLHRQQRD EHKCRLKYGE 420
  421 NWEEYERKVP YKIIPYVY

Type	Start	End	Confidence
Cytoplasmic	1	13	0.91
Transmembrane Helix	14	34	0.94
Non-Cytoplasmic	35	71	0.93
Transmembrane Helix	72	94	0.85
Cytoplasmic	95	106	0.91
Transmembrane Helix	107	127	0.91
Non-Cytoplasmic	128	146	0.86
Transmembrane Helix	147	172	0.85
Cytoplasmic	173	220	0.80
Transmembrane Helix	221	238	0.71
Non-Cytoplasmic	239	277	0.54
Transmembrane Helix	278	297	0.85
Cytoplasmic	298	308	0.60
Transmembrane Helix	309	329	0.95
Non-Cytoplasmic	330	376	0.67
Transmembrane Helix	377	397	0.54
Cytoplasmic	398	438	0.53