YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BOR1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	126	0.81
Transmembrane Helix	127	151	0.79
Non-Cytoplasmic	152	165	0.61
Transmembrane Helix	166	186	0.88
Cytoplasmic	187	191	0.46
Transmembrane Helix	192	213	0.73
Non-Cytoplasmic	214	235	0.72
Transmembrane Helix	236	258	0.89
Cytoplasmic	259	268	0.72
Transmembrane Helix	269	288	0.77
Non-Cytoplasmic	289	328	0.90
Transmembrane Helix	329	347	0.93
Cytoplasmic	348	367	0.88
Transmembrane Helix	368	389	0.93
Non-Cytoplasmic	390	451	0.90
Transmembrane Helix	452	473	0.82
Cytoplasmic	474	493	0.91
Transmembrane Helix	494	512	0.92
Non-Cytoplasmic	513	517	0.73
Transmembrane Helix	518	539	0.92
Cytoplasmic	540	576	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNESTRVTV SRGCTASDEC AQALERTNDE LDRESSVSES RSDEESHEKL SRRRFPTLGI  60
   61 GIWLDLKDRI PYYKSDWVDA FNYRVIPSIV DTYFNNLLPA IAFAQDMFDR TDNSYGVNEV 120
  121 LLSSAMAGIV FGVLGGQPLC IVGVTGPISI FNYTVYEIIK PLNTSYFGFM FWICMWSMIF 180
  181 HLVLAFTNAV CLLQYVTTFP CDIFGLFINV VYIQKGIQIL TRQFSAKSGE KSVQDGFASV 240
  241 VVALVMTAFG LFFKLFHYYP LFSHRIRTFI SDYSTALSVL FWSSFTHFGG YLHDVKFKKL 300
  301 PITKAFFPTS KVNRPQNTWL AYEPIPVKDV FIALPFGIFL TILFYFDHNV SSLMAQRHQY 360
  361 KLKKPSSFHY DFALLGLTTC ISGVLGIPAP NGLIPQAPLH TETLLVRDSN QKVISCVEQR 420
  421 FTNTFQGLMI LGTMTRPLLV CLGEIPQAVL SGLFFIMGIN GLMTNSIIQR LVFLFSDPNR 480
  481 RDNTSPLMKV SKKSMLIFLS FSLTGFAGEF AITNTIAAIG FPLVLLLSVL VSFSFAYIFP 540
  541 TEELKILDTN VAQKFTIKNL LLENIRDAKF CDKHED