YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALP1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	73	0.99
Transmembrane Helix	74	93	0.94
Non-Cytoplasmic	94	104	0.54
Transmembrane Helix	105	139	0.65
Cytoplasmic	140	151	0.40
Transmembrane Helix	152	174	0.72
Non-Cytoplasmic	175	181	0.53
Transmembrane Helix	182	202	0.89
Cytoplasmic	203	211	0.63
Transmembrane Helix	212	237	0.84
Non-Cytoplasmic	238	271	0.64
Transmembrane Helix	272	288	0.63
Cytoplasmic	289	306	0.85
Transmembrane Helix	307	328	0.92
Non-Cytoplasmic	329	359	0.96
Transmembrane Helix	360	384	0.83
Cytoplasmic	385	402	0.89
Transmembrane Helix	403	422	0.93
Non-Cytoplasmic	423	434	0.76
Transmembrane Helix	435	458	0.88
Cytoplasmic	459	479	0.93
Transmembrane Helix	480	502	0.90
Non-Cytoplasmic	503	509	0.86
Transmembrane Helix	510	531	0.92
Cytoplasmic	532	573	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDETVNIQMS KEGQYEINSS SIIKEEEFVD EQYSGENVTK AITTERKVED DAAKETESSP  60
   61 QERREVKRKL KQRHIGMIAL GGTIGTGLII GIGPPLAHAG PVGALISYLF MGTVIYSVTQ 120
  121 SLGEMVTFIP VTSSFSVFAQ RFLSPALGAT NGYMYWLSWC FTFALELSVL GKVIQYWTEA 180
  181 VPLAAWIVIF WCLLTSMNMF PVKYYGEFEF CIASIKVIAL LGFIIFSFCV VCGAGQSDGP 240
  241 IGFRYWRNPG AWGPGIISSD KNEGRFLGWV SSLINAAFTY QGTELVGITA GEAANPRKAL 300
  301 PRAIKKVVVR ILVFYILSLF FIGLLVPYND PKLDSDGIFV SSSPFMISIE NSGTKVLPDI 360
  361 FNAVVLITIL SAGNSNVYIG SRVLYSLSKN SLAPRFLSNV TRGGVPYFSV LSTSVFGFLA 420
  421 FLEVSAGSGK AFNWLLNITG VAGFFAWLLI SFSHIRFMQA IRKRGISRDD LPYKAQMMPF 480
  481 LAYYASFFIA LIVLIQGFTA FAPTFQPIDF VAAYISIFLF LAIWLSFQVW FKCRLLWKLQ 540
  541 DIDIDSDRRQ IEELVWIEPE CKTRWQRVWD VLS