YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LYP1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	113	0.99
Transmembrane Helix	114	136	0.89
Non-Cytoplasmic	137	143	0.71
Transmembrane Helix	144	163	0.78
Cytoplasmic	164	181	0.54
Transmembrane Helix	182	205	0.63
Non-Cytoplasmic	206	222	0.62
Transmembrane Helix	223	242	0.94
Cytoplasmic	243	256	0.63
Transmembrane Helix	257	278	0.85
Non-Cytoplasmic	279	310	0.71
Transmembrane Helix	311	327	0.65
Cytoplasmic	328	345	0.74
Transmembrane Helix	346	367	0.91
Non-Cytoplasmic	368	398	0.82
Transmembrane Helix	399	419	0.85
Cytoplasmic	420	442	0.84
Transmembrane Helix	443	463	0.94
Non-Cytoplasmic	464	472	0.85
Transmembrane Helix	473	497	0.87
Cytoplasmic	498	518	0.92
Transmembrane Helix	519	539	0.92
Non-Cytoplasmic	540	547	0.86
Transmembrane Helix	548	569	0.93
Cytoplasmic	570	611	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRFSNIITS NKWDEKQNNI GEQSMQELPE DQIEHEMEAI DPSNKTTPYS IDEKQYNTKK  60
   61 KHGSLQGGAI ADVNSITNSL TRLQVVSHET DINEDEEEAH YEDKHVKRAL KQRHIGMIAL 120
  121 GGTIGTGLFV GISTPLSNAG PVGSLIAYIF MGTIVYFVTQ SLGEMATFIP VTSSITVFSK 180
  181 RFLSPAFGVS NGYMYWFNWA ITYAVEVSVI GQVIEYWTDK VPLAAWIAIF WVIITLMNFF 240
  241 PVKVYGEFEF WVASVKVLAI MGYLIYALII VCGGSHQGPI GFRYWRNPGA WGPGIISSDK 300
  301 SEGRFLGWVS SLINAAFTYQ GTELVGITAG EAANPRKTVP RAINKVVFRI VLFYIMSLFF 360
  361 IGLLVPYNDS RLSASSAVIA SSPFVISIQN AGTYALPDIF NAVVLITVVS AANSNVYVGS 420
  421 RVLYSLARTG NAPKQFGYVT RQGVPYLGVV CTAALGLLAF LVVNNNANTA FNWLINISTL 480
  481 AGLCAWLFIS LAHIRFMQAL KHRGISRDDL PFKAKLMPYG AYYAAFFVTV IIFIQGFQAF 540
  541 CPFKVSEFFT SYISLILLAV VFIGCQIYYK CRFIWKLEDI DIDSDRREIE AIIWEDDEPK 600
  601 NLWEKFWAAV A