YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YIF1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYNPYAYAT SEQNGVNDRF SHTPQQQRPM QIPRNTPVNG QGNANMNANV NGSGGGFPFQ  60
   61 DPRGSMAFQL GQSAFSNFIG QDNFNQFQET VNKATANAAG SQQISTYFQV STRYVINKLK 120
  121 LILVPFLNGT KNWQRIMDSG NFLPPRDDVN SPDMYMPIMG LVTYILIWNT QQGLKGSFNP 180
  181 EDLYYKLSST LAFVCLDLLI LKLGLYLLID SKIPSFSLVE LLCYVGYKFV PLILAQLLTN 240
  241 VTMPFNLNIL IKFYLFIAFG VFLLRSVKFN LLSRSGAEDD DIHVSISKST VKKCNYFLFV 300
  301 YGFIWQNVLM WLMG

Type	Start	End	Confidence
Cytoplasmic	1	153	0.77
Transmembrane Helix	154	168	0.65
Non-Cytoplasmic	169	186	0.62
Transmembrane Helix	187	206	0.82
Cytoplasmic	207	215	0.64
Transmembrane Helix	216	238	0.68
Non-Cytoplasmic	239	248	0.70
Transmembrane Helix	249	267	0.91
Cytoplasmic	268	293	0.91
Transmembrane Helix	294	313	0.72
Non-Cytoplasmic	314	314	0.80