YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YCIB_CUPNH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFLFDLFPV ILFFAAFKLA DIYTATAVAI GATVLQIGWV WFRHRKVEPM QWVSLLIIAV  60
   61 FGGATLVLHN ETFIKWKPTV LYWMFAVGLL GSVIGWRKNL IRAMMEKQVT LPDPVWARLN 120
  121 AAWAGFFAAM GVLNLYVAYQ FSTEAWVNFK LFGSMGLMLV FIVAQSVWLS RHMPENSQD

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.91
Transmembrane Helix	19	42	0.89
Cytoplasmic	43	51	0.83
Transmembrane Helix	52	69	0.97
Non-Cytoplasmic	70	78	0.77
Transmembrane Helix	79	100	0.90
Cytoplasmic	101	118	0.89
Transmembrane Helix	119	139	0.93
Non-Cytoplasmic	140	148	0.78
Transmembrane Helix	149	169	0.92
Cytoplasmic	170	179	0.92