YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALG9
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.71
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.70
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	88	0.71
Transmembrane Helix	89	105	0.66
Cytoplasmic	106	114	0.47
Transmembrane Helix	115	137	0.64
Non-Cytoplasmic	138	176	0.67
Transmembrane Helix	177	200	0.87
Cytoplasmic	201	210	0.77
Transmembrane Helix	211	233	0.87
Non-Cytoplasmic	234	265	0.84
Transmembrane Helix	266	289	0.80
Cytoplasmic	290	292	0.56
Transmembrane Helix	293	311	0.65
Non-Cytoplasmic	312	317	0.64
Transmembrane Helix	318	338	0.89
Cytoplasmic	339	351	0.69
Transmembrane Helix	352	369	0.55
Non-Cytoplasmic	370	555	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNCKAVTISL LLLLFLTRVY IQPTFSLISD CDETFNYWEP LNLLVRGFGK QTWEYSPEYS  60
   61 IRSWAFLLPF YCILYPVNKF TDLESHWNFF ITRACLGFFS FIMEFKLHRE IAGSLALQIA 120
  121 NIWIIFQLFN PGWFHASVEL LPSAVAMLLY VGATRHSLRY LSTGSTSNFT KSLAYNFLAS 180
  181 ILGWPFVLIL SLPLCLHYLF NHRIISTIRT AFDCCLIFSL TAFAVIVTDS IFYGKLAPVS 240
  241 WNILFYNVIN ASEESGPNIF GVEPWYYYPL NLLLNFPLPV LVLAILGIFH LRLWPLWASL 300
  301 FTWIAVFTQQ PHKEERFLYP IYGLITLSAS IAFYKVLNLF NRKPILKKGI KLSVLLIVAG 360
  361 QAMSRIVALV NNYTAPIAVY EQFSSLNQGG VKAPVVNVCT GREWYHFPSS FLLPDNHRLK 420
  421 FVKSGFDGLL PGDFPESGSI FKKIRTLPKG MNNKNIYDTG KEWPITRCDY FIDIVAPINL 480
  481 TKDVFNPLHL MDNWNKLACA AFIDGENSKI LGRAFYVPEP INRIMQIVLP KQWNQVYGVR 540
  541 YIDYCLFEKP TETTN