YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113867060, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAFHRRNKR SSSGNVTHLR PFRHNQLRGA DDNFDDEAAD DHDIVYQRPR RRGIYLLPNA  60
   61 FTTAALFAGF FAIVQAMNMR FDAAAIAIFA AMVLDGMDGR VARITNTQSA FGEQYDSLSD 120
  121 MTSFGVAPAL VMYEWILHDL GKWGWIAAFV YCTCAALRLA RFNANIGVVD KRFFQGLPSP 180
  181 AAAALVAGFV WLVIDNKLPV KELWMPWVAF GITLYAGLSM VSNAPFYSGK ALDVRYRVPF 240
  241 GMMVLVLVLF VVVSTDPPVA LFGLFVAYAI SGYVLWAWRA MHGKPAIEKK QRENGGKAS

Type	Start	End	Confidence
Cytoplasmic	1	53	0.99
Transmembrane Helix	54	74	0.94
Non-Cytoplasmic	75	82	0.72
Transmembrane Helix	83	102	0.75
Cytoplasmic	103	117	0.74
Transmembrane Helix	118	137	0.77
Non-Cytoplasmic	138	142	0.85
Transmembrane Helix	143	162	0.93
Cytoplasmic	163	172	0.92
Transmembrane Helix	173	194	0.94
Non-Cytoplasmic	195	202	0.94
Transmembrane Helix	203	227	0.85
Cytoplasmic	228	235	0.83
Transmembrane Helix	236	253	0.96
Non-Cytoplasmic	254	259	0.75
Transmembrane Helix	260	280	0.92
Cytoplasmic	281	299	0.95