YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KAR1
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVTSPKDGN HSFSKKNRFN TNKPRFHKLN EQAQSINLPE DRDSIVSSNT TSIMTDDAFD  60
   61 YNEGIASRTK NINSDSDRSN DTIKQNNYNK RETGYNPFYN GSGINQRYTQ FRKREFEPTL 120
  121 AENKAEEYIS DEDNVKIDED NIENELQFTP KIKEASILRS SLLGQRNVLN TRNPKSKESH 180
  181 IKVKPIINNK SSSQRKSSAA LRKQLGKPLP LPYLNSPNSD STPTLQRKEE VFTDEVLQKK 240
  241 RELIESKWHR LLFHDKKMVE KKLESLREYE RKRMPPRGTD VSSSEQDNSF KISTPTKSYV 300
  301 SLEQKPLPNL SAMNNFNDVT DNKEKEETNN NILKFQAQRD PLQILQSEIE MHTKKLDTII 360
  361 ELLKDDTDSK EKRKVVTNDN AAPEQMVNKG WRKNVMMIYK KSGNIMKKYR EYFLWTICIL 420
  421 ILLYCNIYVY YRF

Type	Start	End	Confidence
Cytoplasmic	1	411	0.63
Transmembrane Helix	412	431	0.90
Non-Cytoplasmic	432	433	0.63