YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PGA1
Protein type:	Transmembrane
Type Confidence:	0.60
Topology Confidence:	0.25
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRPQNVHWF IATIVFFIGF VHANTESILY KVPHNFPLKK PRDSSTYARD VNLISSISLS  60
   61 GEAMSQITIE ANTTDLELHN TTYIELADLQ RDETYQIKVC WSAIHPISIN NLQTITIPRF 120
  121 TEFQGTKSDY ARILVTFQVL SDSYPSEHAM VPIQVSLITT RLGIPVDIYP TLIVMVLLVA 180
  181 GLVVTRAPHV LNDLLLKF

Type	Start	End	Confidence
Cytoplasmic	1	6	0.25
Transmembrane Helix	7	24	0.51
Non-Cytoplasmic	25	167	0.62
Transmembrane Helix	168	190	0.66
Cytoplasmic	191	198	0.44