YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RRT16
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMKSHLELF KQKKSTAYIL LTVLFGIGWA TLDLPVMVAM NIRPSISMRP IKPYISWLDS  60
   61 LLKPLPFNSA FGTNSTAHVD LREFLLFIGL NTSPCVSETI AIFLVCCFDR SIFIATEYLF 120
  121 LILLPLRGLC HQFCEQKYVE TI

Type	Start	End	Confidence
Cytoplasmic	1	16	0.84
Transmembrane Helix	17	39	0.83
Non-Cytoplasmic	40	142	0.69