YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113460093, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTTMTNTTA DQKASCPLMV KPQRRRLVSK DGRSQTRGNT RGGSRETCFS ALRDLWGTWL  60
   61 ALRWRWVVLA FCGSFLLHWL LFAVLWYLLA RVNGDLDVLD HDSPPPGHVL CVKHVNGFTA 120
  121 AFSFALETQL TIGYGTMYPN ADCPTAIALL ALQMLLGLML EAFITGAFVA KFSRPQKRCD 180
  181 GILFSPQAVV CEQKGQRCLM FRVCNLQPQP LVDVSVSAVL YEERDDHELH QTALEFSIDN 240
  241 LGSRSCPLFL SPLTFFHPLN PSTPFINNPS SQTHFELVVF LTATQESTGS GYHKRTSYLP 300
  301 DEIQYGYCFS KVTSVHQNKT PNMRYFDTVP CPLTLANTHT TDTPDKEHVV VQLNGEGSDR 360
  361 VE

Type	Start	End	Confidence
Cytoplasmic	1	65	0.94
Transmembrane Helix	66	89	0.87
Non-Cytoplasmic	90	145	0.86
Transmembrane Helix	146	169	0.90
Cytoplasmic	170	362	0.79