YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AQR1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	99	0.94
Transmembrane Helix	100	121	0.86
Non-Cytoplasmic	122	140	0.83
Transmembrane Helix	141	160	0.87
Cytoplasmic	161	168	0.71
Transmembrane Helix	169	193	0.85
Non-Cytoplasmic	194	197	0.68
Transmembrane Helix	198	219	0.85
Cytoplasmic	220	225	0.90
Transmembrane Helix	226	248	0.93
Non-Cytoplasmic	249	255	0.82
Transmembrane Helix	256	276	0.96
Cytoplasmic	277	335	0.98
Transmembrane Helix	336	359	0.81
Non-Cytoplasmic	360	374	0.78
Transmembrane Helix	375	397	0.93
Cytoplasmic	398	432	0.92
Transmembrane Helix	433	454	0.83
Non-Cytoplasmic	455	462	0.81
Transmembrane Helix	463	486	0.85
Cytoplasmic	487	499	0.72
Transmembrane Helix	500	516	0.86
Non-Cytoplasmic	517	523	0.58
Transmembrane Helix	524	546	0.87
Cytoplasmic	547	586	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRSNSIYTE DIEMYPTHNE QHLTREYTKP DGQTKSEKLN FEGAYINSHG TLSKTTTREI  60
   61 EGDLDSETSS HSSDDKVDPT QQITAETKAP YTLLSYGQKW GMVAILTMCG FWSSLGSPIY 120
  121 YPALRQLEKQ FNVDENMVNV TVVVYLLFQG ISPTVSGGLA DCFGRRPIIL AGMLIYVIAS 180
  181 IGLACAPSYG VIIFLRCIQS IGISPTIAIS SGVVGDFTLK HERGTFVGAT SGFVLLGQCF 240
  241 GSLIGAVLTA RWDWRAIFWF LTIGCGSCFL IAFLILPETK RTIAGNLSIK PKRFINRAPI 300
  301 FLLGPVRRRF KYDNPDYETL DPTIPKLDLS SAGKILVLPE IILSLFPSGL LFAMWTLMLS 360
  361 SISSGLSVAP YNYHLVIIGV CYLPGGIGGL MGSFFTGRII DMYFKRKIKK FEQDKANGLI 420
  421 PQDAEINMFK VRLVCLLPQN FLAVVAYLLF GWSIDKGWRI ESILITSFVC SYCAMSTLST 480
  481 STTLLVDLYP TKSSTASSCF NFVRCSLSTI FMGCFAKMKA AMTVGGTFTF LCALVFFFNF 540
  541 LMFIPMKYGM KWREDRLLKQ QRQSWLNTLA VKAKKGTKRD QNDNHN