YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113673471, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFIFSDVYS SYAIIVIILR YIVQVYFLEQ KERYNKSATD RMTSQIALAV TLSVLILLTV  60
   61 SGNILVCLAV YATRRLRNVT NCFIVSLAVT DFLLGALVLP FSTLYQVTGD WPLGAHFCNI 120
  121 YISLDVMLCT ASILNLFAIS LDRYFAVTAP LRYPMLVLPW RVGAILATIW LVSVGVSFVP 180
  181 IHLGWNTRDL SVQNIREGDH ARDCRFELNP TYAIVDAFST FYLPLLAMCW SYHRVFRIAR 240
  241 MRAKRIISTR RGSTSSQGVT ILTLREHKAT VTLAVVLGAF VVCWFPYFTF FTIMGIRNEE 300
  301 NPPQTAQSVV LWLGYANSAL NPVLYATLNR DFRSAYAKLL CGGRRCKTET TIPIAATAAG 360
  361 TMTGHAHSSK GAGFLPRTCV LLKDSENRML DDNSATNGAT VTIVANGSKR

Type	Start	End	Confidence
Cytoplasmic	1	7	0.84
Transmembrane Helix	8	28	0.83
Non-Cytoplasmic	29	46	0.94
Transmembrane Helix	47	71	0.90
Cytoplasmic	72	81	0.78
Transmembrane Helix	82	101	0.94
Non-Cytoplasmic	102	119	0.79
Transmembrane Helix	120	141	0.89
Cytoplasmic	142	157	0.90
Transmembrane Helix	158	181	0.88
Non-Cytoplasmic	182	216	0.91
Transmembrane Helix	217	236	0.92
Cytoplasmic	237	269	0.97
Transmembrane Helix	270	291	0.91
Non-Cytoplasmic	292	308	0.85
Transmembrane Helix	309	328	0.68
Cytoplasmic	329	410	0.61