YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113681379, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRSLREWFK DYRLEQRSHK KRVVTKDGRC NIKFGNVMHR NRFTYVLDFW TTLVETRWRF  60
   61 IIFYFVASYT LSWFIFGLLW YWLARSNGDL LWQNPPPDHN PCAYSLNGMT YAFLYSLETQ 120
  121 GTVGYGNVYV TDQCPGGVAL IIIQMIVGLF IRIFWGGIVI TKITLPKKRA KTITFSESAV 180
  181 ICPKKGTLCL QIRVANLRKT LMIGSQIYGK LLRTTITGGE TNILDQVSIN FMVDAGKDNL 240
  241 FFVCPLTLYH IIDKSSPFFD MAVDTMHQQD FELVVFLDGM AETTSSSCQV RTSYIPQEIM 300
  301 WGYDFLPIIS RSKEGKYRVD FSNFTKVVPV PTAHCSRCYH NEPGNHLEGT DNKSFEVFDM 360
  361 ELPNCNKM

Type	Start	End	Confidence
Cytoplasmic	1	59	0.98
Transmembrane Helix	60	83	0.93
Non-Cytoplasmic	84	137	0.95
Transmembrane Helix	138	159	0.89
Cytoplasmic	160	368	0.96