YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113681440, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRSLREWFK DYRLKQRIRK NRLVTKDGRC NIEFDNVMHR NRFAYVRDFW TTFVETRWRF  60
   61 IILYFVASFT LSWFIFGLIW YWLARSNGDL LWQNPPPDHT PCVYSVYDMT YAFIFSLETQ 120
  121 NTVIYGNVYV TDQCPAGVAL IIIQTIIGIL ISIFWCGIVI TKITLPKKRA KTITFSESAV 180
  181 ICPKKGTLCL QIRVANLRKT LMIGSQIYGK LLRTTVTGGE TVILDQVNID FMVDAGKDNL 240
  241 FFVCPLTLYH IIDKSSPFFD MAVDTLHQQD FELVVFLDGM AETTSSSCQV RTSYIPQEIM 300
  301 WGYDFLPIIS RSEEGRYQVD FSNFAKVVPV PTAHCSRCYH NEPGNHLEGI DNKSFEVFDM 360
  361 ELTNCNKM

Type	Start	End	Confidence
Cytoplasmic	1	59	0.99
Transmembrane Helix	60	83	0.94
Non-Cytoplasmic	84	137	0.96
Transmembrane Helix	138	161	0.89
Cytoplasmic	162	368	0.98