YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LIP1
Protein type:	Transmembrane
Type Confidence:	0.78
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQPTPIITT KSAAKPKPKI FNLFRVCFIS LLLIAAVEYF KYGTRINYEW FHCTPIKEPQ  60
   61 SGSVIKLWAR GGPSCDKRGE YKTIVKRITR DYEPNDEHLS FCIIENDNVP PVHYPIHEDK 120
  121 GEPGYVAYVG YDTDSELVQE LCADSTIYHM

Type	Start	End	Confidence
Cytoplasmic	1	20	0.75
Transmembrane Helix	21	40	0.76
Non-Cytoplasmic	41	150	0.97