YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|94734025, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.90
Transmembrane Helix	20	39	0.92
Non-Cytoplasmic	40	47	0.80
Transmembrane Helix	48	67	0.94
Cytoplasmic	68	98	0.84
Transmembrane Helix	99	121	0.87
Non-Cytoplasmic	122	183	0.97
Transmembrane Helix	184	204	0.94
Cytoplasmic	205	212	0.89
Transmembrane Helix	213	235	0.86
Non-Cytoplasmic	236	263	0.86
Transmembrane Helix	264	284	0.90
Cytoplasmic	285	294	0.85
Transmembrane Helix	295	317	0.92
Non-Cytoplasmic	318	352	0.89
Transmembrane Helix	353	373	0.87
Cytoplasmic	374	397	0.86
Transmembrane Helix	398	420	0.88
Non-Cytoplasmic	421	428	0.82
Transmembrane Helix	429	453	0.90
Cytoplasmic	454	473	0.92
Transmembrane Helix	474	495	0.91
Non-Cytoplasmic	496	510	0.93
Transmembrane Helix	511	534	0.89
Cytoplasmic	535	582	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKVKGQIEE RGNWGSKTEF ILAVAGIVIG LGNVWRFPYL CYKNGGGAFL VPYLVFVVTC  60
   61 GVPLFLLETA MGQYTQEGGI TCWHRLCPLA EGIGYAGQLI VLYSCMYYII ILAWALFYLA 120
  121 FSFSSQLPWA SCDNIWNTDA CVNLAENKLN LSTPMLLNST SSVTEFWQHR VLALSGGIEK 180
  181 VGKINWEILL CLIVMWIICY FCVWKGVKST GKVVYFTATF PYVMLLVLLI RGLTLPGALQ 240
  241 GVVFYLYPEP ARLADPQVWM EAGAQIFFSY ALGTASLTVL GSYNKYNYNC YRSSLWLCLL 300
  301 NSSTSVIAGF AVFSVLGFMA QKQGLPIEEV AESGPGLAFI AYPQAVAMMP FPQLWAACFF 360
  361 IMIILLGLDT QFVAMEVFMT SVIDLFPTVL RKAGRREIFL LLFCLFCFFG QLVMVTEGGM 420
  421 YVFQLFDYYA CSGACLLFLC VFESLAMGWV FGAEKMFGII EDMTNSRPNY WFMLCWKYLT 480
  481 PIVSLASFVC SLVKYKPLTF NRWYVYPDWA YVLGWLLALS SILLVPGWAL GRMFAGKGSI 540
  541 KQRWSHLCSP DTNPHFACKI QNKRHEKTPV TEMEDLFRSN TN