YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|94734103, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.85
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWHSLAFTLC GISALIQVSV QGPYQRTLLK NLLKDYNRME RPVANDSQPL TVFLSMSLIQ  60
   61 IMDVDEKNQV LTTNIWLNMH WYDHYLQWNQ SEYPGVKNLR FTTDQVWTPD ILLYNSADDK 120
  121 FDSTFKSNVV VNSSGYCNYL PPGIFMSTCN VDVRWFPFDI QKCELKFGSW TFDGWLLDLQ 180
  181 MNEADISGYM PNGEWDLVGV PGTRNELFYD CCKEPYPDVT FVVTIRRRTL YYALNLLIPC 240
  241 VLLSSMTLLI FLLPADSGEK ISLGITVLLS LTVFMLLVAE IMPATSDSIP LIGQYFASIM 300
  301 IIVGMSVIAT VVVLQYHHHD PNGGNMPKWV QLVLLQWVAW FLRMKRPGES EDPERPPCAP 360
  361 HLRRCSSGSQ SGSLPNAPGS ASADLHHHHI SSTLHPLHPQ SLLQAAAAAG HTHHLHNQTN 420
  421 SANNNGNLLY IGFSSLDEAS PPALLADSVQ RNSMSGGPRP TVVSPPVVGS SPPPHLPSQF 480
  481 CSPPPPPTPN LEATGCPSTV SGGGGGCSCS GTSGGGDPQL QAILEEVRYV ADRFRGQDEN 540
  541 ESVTEQWKFA AAVIDRLCLV AFSVFNIICT ISILMSAPNF VEAVSKDFI

Type	Start	End	Confidence
Signal Peptide	1	22	0.82
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	230	0.86
Transmembrane Helix	231	253	0.94
Cytoplasmic	254	260	0.79
Transmembrane Helix	261	284	0.88
Non-Cytoplasmic	285	291	0.78
Transmembrane Helix	292	316	0.87
Cytoplasmic	317	556	0.94
Transmembrane Helix	557	577	0.87
Non-Cytoplasmic	578	589	0.86