YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|94734029, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.90
Transmembrane Helix	20	39	0.90
Non-Cytoplasmic	40	47	0.79
Transmembrane Helix	48	67	0.94
Cytoplasmic	68	98	0.81
Transmembrane Helix	99	120	0.83
Non-Cytoplasmic	121	183	0.95
Transmembrane Helix	184	204	0.94
Cytoplasmic	205	212	0.89
Transmembrane Helix	213	235	0.87
Non-Cytoplasmic	236	265	0.86
Transmembrane Helix	266	286	0.91
Cytoplasmic	287	294	0.92
Transmembrane Helix	295	318	0.89
Non-Cytoplasmic	319	350	0.89
Transmembrane Helix	351	373	0.81
Cytoplasmic	374	397	0.86
Transmembrane Helix	398	420	0.87
Non-Cytoplasmic	421	429	0.86
Transmembrane Helix	430	453	0.91
Cytoplasmic	454	473	0.92
Transmembrane Helix	474	493	0.95
Non-Cytoplasmic	494	510	0.91
Transmembrane Helix	511	534	0.89
Cytoplasmic	535	577	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPIKEEIEE RGFWGKKAEF LLAVAGNVVG LGNVWRFPYL CYRNGGGVFL IPYLVFVVTC  60
   61 GLPLFLLETA MGQFTHEGGI TCWHRLCPLA QGVGYAGQLT VLYSCMYYTI ILAWALFYLV 120
  121 SSFSSQLPWV SCNNIWNTDN CVNLAAGNLT FNRTTLANST SAATEFWERR VLSLSGGIED 180
  181 IGKINWEILL CLIAMWIICY FCIWKGVKST GKVVYFTATF PYVMLLVLLI RGLTLPGALQ 240
  241 GVVFYLYPEP ARLADPQVWM EAGTQVFFSY SVCSGILISL GSYNQYSNNC YRDSFWLCLL 300
  301 NSGTSFVAGF AVFSVLGFMA HVQGVPVEEV AESGPGLAFI AYPQAMAMMP FPQLWAVCFF 360
  361 IMIILLGLDS QFVGIECVIT SVMDLFPEVL RRAGRRELFV LLLCLTCFFG QLIMVTEGGM 420
  421 YVFQLFDNYA CNGACLLFLS VFESLAIGWL FGAEKMFDII EDMTESRPNY WFMLCWKYLT 480
  481 PLVSLMSFVY SMVRYTPLTF NRWYVYPDWA YALGWLLALS SILLVPGWAL GQMWAGKGTL 540
  541 KQRWGHLCSP ETKLMLSFKQ IQDQFAEMED LVKSSTI