YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GOT1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWLTEAQKFG VAFTFGGFLF FLFGIFTFFD RALLALGNIL FLIGVFLIIG SQKTYIFFTR  60
   61 PNKRRGSLFF LVGAFLILLK WTFLGFIIES LGIIGLFGDF FGVIVQFLRS MPIIGPILSH 120
  121 PAIAPIVDKL AGVRVLPV

Type	Start	End	Confidence
Cytoplasmic	1	8	0.94
Transmembrane Helix	9	29	0.93
Non-Cytoplasmic	30	33	0.82
Transmembrane Helix	34	56	0.88
Cytoplasmic	57	65	0.89
Transmembrane Helix	66	88	0.84
Non-Cytoplasmic	89	90	0.64
Transmembrane Helix	91	113	0.66
Cytoplasmic	114	138	0.73