YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|94732256, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.96
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILYYILKQF FLSLLVCWGA NGIYAQKLLN DLFNNYTSAL RPVEDTEDIL NVTLQITLSQ  60
   61 IIDMDERNQI LTAYLWIRQV WIDKYLTWNK ENYDGLDTIR IPGSYVWRPD IVLYNSADDH 120
  121 FTSTMDTNVV IRHDGQIMWD APAITKSSCK VDVSFFPFDA QQCRLTYGSW TYNGNQLDIL 180
  181 NAMESADLAD LVDNVEWEVL GMPAKRNIIL YGCCADPYPD VTYTLKLKRR ASFYVFNLLI 240
  241 PCVMISFLAP LGFYLPADSG EKVSLGVTVM LALTVFQLLV AEIMPPSENV PLIGKYYIAT 300
  301 MTMITASTAL TIFVMNIHHC GPDAKPVPDW AKKFILQYLA RICFVYEVGE NCMTPQPEKP 360
  361 DPQPQKPQDC NCNMNGQAGK DDFVFKFDRN QEATSPKLLE DREDMSQILS PACSLGKHPT 420
  421 CRYGVWKEGV FMSMDCGDGA AETGKPIGRG QEGCRDHDSG FKSQCKCDQQ HLLRNIEYVA 480
  481 NCYRDQRATA RRTGEWKKVA KVLDRFFMWL FFIMVFFMSL LIMGKAI

Type	Start	End	Confidence
Signal Peptide	1	25	0.94
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	232	0.98
Transmembrane Helix	233	255	0.93
Cytoplasmic	256	262	0.89
Transmembrane Helix	263	284	0.89
Non-Cytoplasmic	285	295	0.83
Transmembrane Helix	296	317	0.90
Cytoplasmic	318	505	0.98
Transmembrane Helix	506	524	0.96
Non-Cytoplasmic	525	527	0.79