YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MARH2_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTGECCHLP GSLCDCTGNA ALSKTVEEAD NRRAQYVTQV TAKDGRLLST VIKALGTQSD  60
   61 RPICRICHEG QDVCNSEGLL SPCDCTGTLG TVHKSCLEKW LSSSNTSYCE LCHTEFTIER 120
  121 RPRPLTEWLR DPGPRNEKRT LFCDMVCFLF ITPLAAISGW LCLRGAQDHL HFNSRLEAVG 180
  181 LIALTIALFT IYVLWTLVSF RYHCQLYSEW RRTNQKVRLL IPDTKGAHST QHSLLSTKLL 240
  241 KKTADETIV

Type	Start	End	Confidence
Cytoplasmic	1	139	0.97
Transmembrane Helix	140	163	0.88
Non-Cytoplasmic	164	177	0.89
Transmembrane Helix	178	202	0.85
Cytoplasmic	203	249	0.96