YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76786325, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	129	0.91
Transmembrane Helix	130	153	0.88
Non-Cytoplasmic	154	200	0.80
Transmembrane Helix	201	221	0.67
Cytoplasmic	222	255	0.68
Transmembrane Helix	256	277	0.91
Non-Cytoplasmic	278	351	0.60
Transmembrane Helix	352	370	0.74
Cytoplasmic	371	388	0.62
Transmembrane Helix	389	415	0.86
Non-Cytoplasmic	416	726	0.71
Transmembrane Helix	727	745	0.86
Cytoplasmic	746	757	0.75
Transmembrane Helix	758	779	0.85
Non-Cytoplasmic	780	795	0.83
Transmembrane Helix	796	819	0.81
Cytoplasmic	820	839	0.85
Transmembrane Helix	840	864	0.89
Non-Cytoplasmic	865	894	0.88
Transmembrane Helix	895	915	0.71
Cytoplasmic	916	925	0.69
Transmembrane Helix	926	948	0.92
Non-Cytoplasmic	949	1176	0.81
Transmembrane Helix	1177	1197	0.80
Cytoplasmic	1198	1212	0.80
Transmembrane Helix	1213	1232	0.83
Non-Cytoplasmic	1233	1243	0.72
Transmembrane Helix	1244	1265	0.86
Cytoplasmic	1266	1289	0.79
Transmembrane Helix	1290	1316	0.84
Non-Cytoplasmic	1317	1415	0.58
Transmembrane Helix	1416	1439	0.90
Cytoplasmic	1440	1492	0.70
Transmembrane Helix	1493	1516	0.75
Non-Cytoplasmic	1517	1527	0.62
Transmembrane Helix	1528	1551	0.89
Cytoplasmic	1552	1559	0.56
Transmembrane Helix	1560	1581	0.89
Non-Cytoplasmic	1582	1624	0.60
Transmembrane Helix	1625	1651	0.80
Cytoplasmic	1652	1664	0.77
Transmembrane Helix	1665	1682	0.87
Non-Cytoplasmic	1683	1716	0.79
Transmembrane Helix	1717	1740	0.88
Cytoplasmic	1741	1958	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPLLAPPG PDSFKRFTLE SLANIEKRIA EEKKKKPVKP RSDSSHRDDD DDNKPKPNSD  60
   61 LEAGKGVPFI YGDVPSNMLA VPLEDLDPFY LNKKTFIVLN KGKTIFRFSA TPSLYIISPF 120
  121 NLFRQIAIKI LIHSFFSMII MCTILTNCVF MTFSNPPEWS KQVEYTFTGI YTFESLTKIV 180
  181 ARGFCIDDFT FLRDPWNWLD FMVISMAYVT EFVDLGNVSA LRTFRVLRAL KTISVIPRLK 240
  241 TIVGALIQSV KKLSDVMILT VFCLSVFALI GLQLFMGNLR QKCVIWPVNS TETYLANGSK 300
  301 GFDFNEYIMN DTNFYFLPGM LDALLCGNSS DSGRCPEGYT CMKAGRNPNY GYTSFDSFGW 360
  361 AFLALFRLMT QDFWENLYQL TLRAAGKTYM IFFVLVIFVG SFYLVNLILA VVAMAYEEQN 420
  421 QATIEEAEQK EAEFKAMLEQ LKKQQEEAQA NAMATSAGTV SEDAVEDDGG GHLSRSSSEV 480
  481 SKLSSKSAKE RRNRKKKWRK EQEEKGDSEK VVKSESDDGS KRSRFRFRDN RLGRKASIMN 540
  541 QSLLSIPGSP FMSRRSSIFS FKGSENEFAD DEHSTVEESE DRRGSLFVPY RRSSYSGYSQ 600
  601 GSSRINPLAP HPGCKRNSTV DCNGVVSLIG PGPGRLLPET TEVEGKRKHS GSLMVSVDQL 660
  661 NTSFSRKERA NSAMTVVTNT LVEELEESQR KCPPCWYKFA NTFLIWECCP IWIKIKEIVN 720
  721 LIVMDPFVDL AITICIVLNT VFMAMEHYPM TPRFEEVLSV GNLVFTGIFT AEMFAKLIAM 780
  781 DPYYYFQEGW NIFDGFIVSL SLVELGLADV EGLSVLRSFR LLRVFKLAKS WPTLNMLIKI 840
  841 IGNSVGALGN LTLVLAIIVF IFAVVGMQLF GKSYKDCVCK IAESCELPRW HMNDFFHSFL 900
  901 IVFRVLCGEW IETMWDCMEV AGQSMCLIVF MMVMVIGNLV VLNLFLALLL SSFSADNLAA 960
  961 TDDDGEMNNL QISVIRIKKG IAWFKIHVRL LVAHVLKKKP LEDEDKPLDD MYDKKLNLMG1020
 1021 NHTGVEIKCG DLNYPKNGNG TTSGIGSSVG KYMIDEEPMS FIHNPNLTVR VPIAVGGSDF1080
 1081 ENLNTEDFSS ESDVENSKDL DDTSSSEGST IDIKPDEEEM AVVEVVEEYL DPEACWTDAC1140
 1141 VARYKCCDVP ITEGWGKYWW FLRKTCYLIV EHNWFETLII FMILLSSGAL AFEDVYIEQR1200
 1201 KTIQIILEYA DRVFTYIFIL EMLLKWVAYG FVKYFTNAWC WLDFFIVDVS IVSLIANALG1260
 1261 YSDLGPIKSL RTLRALRPLR ALSRFEGMRV VVNALVGAIP SIMNVPLVCL IFWLIFSIMG1320
 1321 VNLFAGKYYY CFNQTAEEYF QVDVVNNKTE CFALINANYT EVRWKNVKIN FDNVGAGYLA1380
 1381 LLQVATFKGW MDIMYAAVDS RKVEDQPLYE DNIYMYIYFV IFIIFGSFFT LNLFIGVIID1440
 1441 NFNQQKKKFG GQDIFMPEEQ KKYYNAMKKL GSKKPQKPIP RPLNKIQGMV FDFVTQQAFD1500
 1501 ISIMMLICLN MVTMMVETDD QSDETENILY WINFVFIVAF TGEFVLKLFA LRHYYFTNGW1560
 1561 NVFDCVVVIL SIVGMFLADL IEKYFVSPTL FRVIRLARIG RILRLIKGAK GIRTLLFALM1620
 1621 MSLPALFNIG LLLFLVMFIF SIFGMSNFAY VKREIGIDDM YNFETFGNSM ICLFMITTSA1680
 1681 GWDGLLAPIL NYPPDCDPNK ENPGTTVKGN CGNPSVGIFF FVMYIIVSFL IVVNMYIAII1740
 1741 LENFSVATEE SADPLCEDDF ESFYEIWEKF DPDASQFITF AKLPDFADTL EHPLRVPKPN1800
 1801 IIELIAMDLP MVSGDRIHCL DILFAFTKRV LGDSGDLDMM RQQMEERFVA ANPSKVSYEP1860
 1861 ITTTLRRKQE EVSAIVIQRS YRSHLASRGF ICKRRPANNK LENGGGNQEK KEGTPSTASL1920
 1921 PSYDSVTKPE KEKQDDNNEG KGRKEKGRNQ KDVRESKC