YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SC4AB_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	125	0.98
Transmembrane Helix	126	149	0.90
Non-Cytoplasmic	150	193	0.87
Transmembrane Helix	194	214	0.79
Cytoplasmic	215	224	0.73
Transmembrane Helix	225	244	0.77
Non-Cytoplasmic	245	251	0.68
Transmembrane Helix	252	273	0.92
Cytoplasmic	274	397	0.80
Transmembrane Helix	398	422	0.87
Non-Cytoplasmic	423	563	0.72
Transmembrane Helix	564	587	0.77
Cytoplasmic	588	599	0.64
Transmembrane Helix	600	622	0.80
Non-Cytoplasmic	623	637	0.76
Transmembrane Helix	638	658	0.84
Cytoplasmic	659	681	0.81
Transmembrane Helix	682	706	0.87
Non-Cytoplasmic	707	734	0.83
Transmembrane Helix	735	755	0.78
Cytoplasmic	756	767	0.73
Transmembrane Helix	768	791	0.91
Non-Cytoplasmic	792	975	0.90
Transmembrane Helix	976	996	0.85
Cytoplasmic	997	1011	0.77
Transmembrane Helix	1012	1028	0.86
Non-Cytoplasmic	1029	1042	0.73
Transmembrane Helix	1043	1066	0.81
Cytoplasmic	1067	1088	0.86
Transmembrane Helix	1089	1116	0.88
Non-Cytoplasmic	1117	1172	0.78
Transmembrane Helix	1173	1191	0.76
Cytoplasmic	1192	1212	0.69
Transmembrane Helix	1213	1234	0.92
Non-Cytoplasmic	1235	1296	0.77
Transmembrane Helix	1297	1315	0.91
Cytoplasmic	1316	1326	0.75
Transmembrane Helix	1327	1350	0.89
Non-Cytoplasmic	1351	1358	0.70
Transmembrane Helix	1359	1380	0.87
Cytoplasmic	1381	1404	0.68
Transmembrane Helix	1405	1426	0.65
Non-Cytoplasmic	1427	1427	0.48
Transmembrane Helix	1428	1450	0.79
Cytoplasmic	1451	1463	0.64
Transmembrane Helix	1464	1484	0.83
Non-Cytoplasmic	1485	1512	0.67
Transmembrane Helix	1513	1537	0.85
Cytoplasmic	1538	1784	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARLLPPTGT DVFRPLTLES LAEIDRRMAE EAAEQERMKE QNVKVAEEDL PKPTSDLEAG  60
   61 KVLPFIYGDP PPNLLNVPIE ELDPYYKAQK TFIVIDKKNT IYRFNTEPAC YCLSPFNPVR 120
  121 RAAIRILIHS LFSLVIMLTI LTNCVFMAMS DPPGWSKILE YVFTGIYTFE AMVKVLSRGF 180
  181 CIGDFTFLRD PWNWLDFMVI SMAYLTEFVD LGNISALRTF RVLRALKTIT VIPGLKTIVG 240
  241 ALIQSVKKLA DVMILTVFCL SVFALIGLQL FMGNLRQKCV LWPPVGWYSD NLTVLSNYTD 300
  301 INGNGTANST FDYQKYINSE ENYYYVPGQM DPLVCGNSSD AGLCPEGYIC LKAGRNPNYG 360
  361 YTSYDNFGWA FLALFRLMTQ DFWENLFQLT LRAAGKTYMI FFVVIIFLGS FYLINLILAV 420
  421 VAMAYAEQNE ATAAEAKEKE EEYAKIMEQL KKQAEQKNGM VNGSKTSLSS KKKGDNDQMQ 480
  481 SDYDGIALKP LSKSNGSKGN INYLEVPDSQ IRKPSVVSAV ESALDAQEDI ERPCPPGWYK 540
  541 FADIFLKWDC CIPWVKFKRI VYLFVMDPFV DLGITLCIVL NTVFMAMEHY PMSVHVEEVL 600
  601 AIGNLVFTGI FAAEMVLKLI ALDPYYYFQV GWNIFDSIIV TMSLVELMLA DVEGLSVLRS 660
  661 FRLMRVFKLA KSWPTLNMLI KIIGNSVGAL GNLTLVLAII VFIFAVVGMQ LFGKSYTDSV 720
  721 CKISSDCELP RWHMADFFHA FLIIFRVLCG EWIETMWDCM EVAGQGMCII VFMMVMVIGN 780
  781 LVVLNLFLAL LLSSFSGDNL SASDDDGENN LQIAISRITR GIDWIKAFVN KHVRQCLNLK 840
  841 PKEEGAKVNG EGDAKMNAIM NSSSSMVKVP IANGESDDDD GNGSSEDEDD EGRDINMKKK 900
  901 NGDESSTCST VDKPPEVEDL VEEEEEDLTS PEDCYTENCI RRCPCLDLDV SQGKGKAWWN 960
  961 FRKTCFAIVE HSYFETFIIF MILLSSGALA FEDIYIEQRR MIKIILEYAD QVFTYVFVVE1020
 1021 MLLKWVAYGF KVYFTNAWCW LDFLIVDVSL ISLTANILGY SELGAIKSLR TLRALRPLRA1080
 1081 LSRFEGMRVV VVNALVGAIP SIFNVLLVCL IFWLIFSIMG VNLFAGKFYY CFNETSEEVF1140
 1141 DHNVVNNKTD CYELMEFHPE VRWMNGKINF DNVGMGYLAL LQVATFKGWM DIMYSAVDSR1200
 1201 AIESQPVYEA NLYMYIYFVI FIIFGSFFTL NLFIGVIIDN FNQQKAKLGG TDIFMTEEQK1260
 1261 KYYNAMKKLG SKKPQKPIPR PTNCCQGLVF DFVTQQFFDI FIMVMICLNM VTMMVETDDQ1320
 1321 SAEIEEILFY INFAFIILFT GECVLKITAL RYHYFSIGWN IFDFVVVILS ILGIGLADLI1380
 1381 EKYFVSPTLF RVIRLARIGR VLRLIRGAKG IRTLLFALMM SLPALFNIGL LLFLIMFIFS1440
 1441 IFGMSNFAYV KKEVGIDDMM NFETFGNSII CMFMITTSAG WDGLLAPILN SPPDCDPDVD1500
 1501 NPGSTTRGNC GNAAVGIVFF CSYIVMSFLV VVNMYIAIIL ENFNVATEES SDPLCEDDFE1560
 1561 MFYETWEKFD PTASQFIDYN RLSEFCDTLK DPLRIPKPNT LKLITMDIPM VTGDKIHCLD1620
 1621 LLLALTGEVL GGSDQMDGMK ATMEEKFMAN NPSKASYEPI TSTLKRKQEE VAASTIQRAY1680
 1681 RSHILKRCVK QASYMYRDKT GSKKPTGEAP EKVGMIAENM RSLYGDQAVE DDHPVGCSFS1740
 1741 QHGKTQFGAK RPPVKVQSDV VLHSAPFPVP ESSTAADNLR ESIV