YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|111308589, gi...
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEPPSRGAE RDLFRDTWVR YLGYANEVGE AFRSLVPAAV VWLSYGVSSS YVLADAIDKG  60
   61 KKARDVPGPE AGRSSRVTVA VVDTFVWQAL ASVAIPGFTI NRVCAASLYI LSTATRWPLA 120
  121 VRKWTTTTLG LLAIPVIIHP IDRSVDFLLD SSLRKLYPSV EKPSSS

Type	Start	End	Confidence
Cytoplasmic	1	28	0.56
Transmembrane Helix	29	43	0.41
Non-Cytoplasmic	44	88	0.62
Transmembrane Helix	89	111	0.52
Cytoplasmic	112	120	0.64
Transmembrane Helix	121	141	0.64
Non-Cytoplasmic	142	166	0.81