YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115496264, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGLFSRWRT KPSTVEVLEN IDKEIQALEE FREKNQRLQK LWVGRLILYS SVLYLFTCLI  60
   61 VYLWYLPDEL TARLAMTLPF FAFPLIIWSI RTVLIFFFSK RTERNNEALD DLKSQKKKIL 120
  121 EEVMEKETYK TAKLILERFD PDSKKAKEFE PPSAGATVTP RPGQEIRQRT AAQRNLSPTP 180
  181 AGSSQGPPLQ IPVSPGPPKD TSAPGGPPER TVTPALSSNV LPRRFGSPAT SVPGMGLHPP 240
  241 GPPLARPILP RERGALDRIV EYLVGDGPQN RYALICQQCF SHNGMALKEE FEYIAFRCAY 300
  301 CFFLNPARKT RPQAPRLPEF SFEKRQALEV SNTVGSLPSE SVISSENQIN EESLEEQDVL 360
  361 DNSTEQTDDK IPDTEQTNPV IEQASGIEEP EEKQEETENE ETSMNEDKSA VPRASAVPNP 420
  421 ELSGESLTM

Type	Start	End	Confidence
Cytoplasmic	1	41	0.97
Transmembrane Helix	42	66	0.89
Non-Cytoplasmic	67	73	0.86
Transmembrane Helix	74	95	0.89
Cytoplasmic	96	429	0.95