YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ZRC1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITGKELRII SLLTLDTVFF LLEITIGYMS HSLALIADSF HMLNDIISLL VALWAVDVAK  60
   61 NRGPDAKYTY GWKRAEILGA LINAVFLIAL CFSIMIEALQ RLIEPQEIQN PRLVLYVGVA 120
  121 GLISNVVGLF LFHDHGSDSL HSHSHGSVES GNNDLDIESN ATHSHSHASL PNDNLAIDED 180
  181 AISSPGPSGQ IGEVLPQSVV NRLSNESQPL LNHDDHDHSH ESKKPGHRSL NMHGVFLHVL 240
  241 GDALGNIGVI AAALFIWKTE YSWRYYSDPI VSLIITIIIF SSALPLSRRA SRILLQATPS 300
  301 TISADQIQRE ILAVPGVIAV HDFHVWNLTE SIYIASIHVQ IDCAPDKFMS SAKLIRKIFH 360
  361 QHGIHSATVQ PEFVSGDVNE DIRRRFSIIA GGSPSSSQEA FDSHGNTEHG RKKRSPTAYG 420
  421 ATTASSNCIV DDAVNCNTSN CL

Type	Start	End	Confidence
Cytoplasmic	1	8	0.93
Transmembrane Helix	9	30	0.87
Non-Cytoplasmic	31	39	0.65
Transmembrane Helix	40	58	0.82
Cytoplasmic	59	76	0.82
Transmembrane Helix	77	99	0.90
Non-Cytoplasmic	100	112	0.81
Transmembrane Helix	113	133	0.94
Cytoplasmic	134	233	0.88
Transmembrane Helix	234	257	0.92
Non-Cytoplasmic	258	264	0.82
Transmembrane Helix	265	286	0.89
Cytoplasmic	287	442	0.85