YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ROT1
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.80
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWSKKFTLKK LILGGYLFAQ KVYCEDESNS IYGTWSSKSN QVFTGPGFYD PVDELLIEPS  60
   61 LPGLSYSFTE DGWYEEATYQ VSGNPRNPTC PMASLIYQHG TYNISENGTL VLNPIEVDGR 120
  121 QLFSDPCNDD GVSTYSRYNQ TETFKEYAVG IDPYHGIYTL QLYQYDGTPM QPLYLAYRPP 180
  181 MMLPTETLNP TSSATSTDDP SSNKKRSLRS LVRRSLENRH KTNAIKRQNT SFLTSNAIWY 240
  241 ISAGMLGVGS LLFLAF

Type	Start	End	Confidence
Signal Peptide	1	24	0.86
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	236	0.92
Transmembrane Helix	237	255	0.91
Cytoplasmic	256	256	0.86