YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MMT1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRICVKRPC IKIVLSQVRP ALLVRKENLH ISTGVKVEKS SIINQKDPNK VRVEINELKR  60
   61 QAEIEKAAIK ELEKNPQYQK LAEAFNSHDH VHLRESETEQ NDIISLGTIR DYKSSKCEQA 120
  121 DKPSSLNLHS HTHSHGHTHS HAAHNPLLVL STEQIRKNAG VRITWVGLGV NVGIAIGKFF 180
  181 GGIVFHSQAL FADAIHAISD MVSDLLTLLS VGLAANKPTA DYPYGYGKIE TVGSLAVSTI 240
  241 LAMAGISIGW SSLCALVGPV IPHTIIDTIG NLGHAHTYSE DIIEDVTDIN AAWIAAASIA 300
  301 AKEWIFRATR KIAINTNSNV LMANAWHHRV DSLTSLVALV AISTGYLVNI QSLDTIGGLI 360
  361 VSGLIIKAGG EGMCIAIKEL IDQSVSRDDP RYLEIETLVK DTLNKLISNN NSQKPYGLKE 420
  421 LTLLSSGPNL RGHLTLEVPL QKWGNILGVN EFEIVTHHLR NVLTNEVSNL RRLDIEYVEE 480
  481 KNGEENEHIK GQQNYKEDVL IKHDHTNTHI

Type	Start	End	Confidence
Cytoplasmic	1	162	0.96
Transmembrane Helix	163	185	0.86
Non-Cytoplasmic	186	193	0.80
Transmembrane Helix	194	215	0.58
Cytoplasmic	216	231	0.58
Transmembrane Helix	232	259	0.75
Non-Cytoplasmic	260	288	0.62
Transmembrane Helix	289	306	0.42
Cytoplasmic	307	329	0.67
Transmembrane Helix	330	348	0.69
Non-Cytoplasmic	349	355	0.59
Transmembrane Helix	356	377	0.42
Cytoplasmic	378	510	0.63