YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YMR155W
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.88
Transmembrane Helix	19	38	0.93
Non-Cytoplasmic	39	58	0.77
Transmembrane Helix	59	78	0.92
Cytoplasmic	79	83	0.87
Transmembrane Helix	84	104	0.91
Non-Cytoplasmic	105	111	0.75
Transmembrane Helix	112	133	0.93
Cytoplasmic	134	145	0.83
Transmembrane Helix	146	166	0.91
Non-Cytoplasmic	167	175	0.74
Transmembrane Helix	176	196	0.92
Cytoplasmic	197	318	0.93
Transmembrane Helix	319	340	0.91
Non-Cytoplasmic	341	362	0.86
Transmembrane Helix	363	383	0.71
Cytoplasmic	384	397	0.69
Transmembrane Helix	398	417	0.83
Non-Cytoplasmic	418	435	0.73
Transmembrane Helix	436	458	0.88
Cytoplasmic	459	466	0.65
Transmembrane Helix	467	489	0.83
Non-Cytoplasmic	490	515	0.81
Transmembrane Helix	516	538	0.85
Cytoplasmic	539	547	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKKHQNSKM GNTNHFGHLK SFVGGNVVAL GAGTPYLFSF YAPQLLSKCH IPVSASSKLS  60
   61 FSLTIGSSLM GILAGIVVDR SPKLSCLIGS MCVFIAYLIL NLCYKHEWSS TFLISLSLVL 120
  121 IGYGSVSGFY ASVKCANTNF PQHRGTAGAF PVSLYGLSGM VFSYLCSKLF GENIEHVFIF 180
  181 LMVACGCMIL VGYFSLDIFS NAEGDDASIK EWELQKSRET DDNIVPLYEN SNDYIGSPVR 240
  241 SSSPATYETY ALSDNFQETS EFFALEDRQL SNRPLLSPSS PHTKYDFEDE NTSKNTVGEN 300
  301 SAQKSMRLHV FQSLKSSTFI GYYIVLGILQ GVGLMYIYSV GFMVQAQVST PPLNQLPINA 360
  361 EKIQSLQVTL LSLLSFCGRL SSGPISDFLV KKFKAQRLWN IVIASLLVFL ASNKISHDFS 420
  421 SIEDPSLRAS KSFKNISVCS AIFGYSFGVL FGTFPSIVAD RFGTNGYSTL WGVLTTGGVF 480
  481 SVSVFTDILG RDFKANTGDD DGNCKKGVLC YSYTFMVTKY CAAFNLLFVL GIIGYTYYRR 540
  541 RATANSL