YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SHH3_YEAST
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKATIQRVTS VFGVPRASVF VPRISTPFIL HNYISNGRMD LFSKEFHNGR VSKSDLWSSN  60
   61 KEEELLVSQR KKRPISPHLT VYEPEMSWYL SSLHRISGVL LALGFYAFTI TLGVTTIMGM 120
  121 DTTFQDLNKW YHEKMPKWSQ WVAKGSAAYL FAFHFGNGIR HLIWDMGYEL TNRGVIKTGS 180
  181 IVLAGTLVLG TYLLAQ

Type	Start	End	Confidence
Cytoplasmic	1	95	0.89
Transmembrane Helix	96	120	0.86
Non-Cytoplasmic	121	140	0.86
Transmembrane Helix	141	164	0.80
Cytoplasmic	165	173	0.83
Transmembrane Helix	174	195	0.92
Non-Cytoplasmic	196	196	0.86