YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RIM9
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSMIHIVVF LLAITTMFEI LPLITVPVTK YLSLSSFRNH YYGLFGWCVR GQNQELMCTK  60
   61 MKIGYDSTDV DSSGHVLTLP SNSKVVVSNL LVVHPISLAF TGTLLILAVI IMVTPLGDSP 120
  121 EMLLFTALFS LPTFMLCLLC FLVDILLFIS KLDWPGWLML AATISVALCC SMLWVMRRVV 180
  181 SVKKYESQQS IAHACSMEQY SISDIYQSKQ NGNSSEYEVA PTHTDSLIAP EVTYRGFIE

Type	Start	End	Confidence
Cytoplasmic	1	6	0.90
Transmembrane Helix	7	28	0.91
Non-Cytoplasmic	29	91	0.93
Transmembrane Helix	92	114	0.89
Cytoplasmic	115	123	0.78
Transmembrane Helix	124	148	0.90
Non-Cytoplasmic	149	155	0.81
Transmembrane Helix	156	176	0.94
Cytoplasmic	177	239	0.96