YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YMR034C
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTQYSLIRK IWAHSVTEFL KSQWFFICLA ILIVIARFAP NFARDGGLIK GQYSIGYGCV  60
   61 AWIFLQSGLG MKSRSLMANM LNWRAHATIL VLSFLITSSI VYGFCCAVKA ANDPKIDDWV 120
  121 LIGLILTATC PTTVASNVIM TTNAGGNSLL CVCEVFIGNL LGAFITPALV QMFTNRAPFA 180
  181 YGNPATGNGI GALYGRVMKQ VGLSVFVPLF VGQVIQNCFP KGTAYYLGFL KKYHIKIGSY 240
  241 MLLLIMFSSF STAFYQDAFT SVSHVCIIFL CFFNLGIYIF FTGLSYLCAR PWFILKLFPH 300
  301 EPIEGKSTRL YRYSYNIFRP FYYSKEDAIC IMFCGPAKTA ALGVSLITSQ YGDKKEHLGK 360
  361 LLVPLVLYQV EQVMTANFFV SLFKRWIQKD AQADGSESSC ANENEEVDLE KIISIGTGEN 420
  421 QSVLSNNVPY TQPR

Type	Start	End	Confidence
Cytoplasmic	1	19	0.95
Transmembrane Helix	20	39	0.96
Non-Cytoplasmic	40	48	0.82
Transmembrane Helix	49	70	0.85
Cytoplasmic	71	86	0.84
Transmembrane Helix	87	111	0.86
Non-Cytoplasmic	112	118	0.91
Transmembrane Helix	119	140	0.92
Cytoplasmic	141	148	0.79
Transmembrane Helix	149	170	0.90
Non-Cytoplasmic	171	196	0.80
Transmembrane Helix	197	219	0.71
Cytoplasmic	220	236	0.81
Transmembrane Helix	237	255	0.94
Non-Cytoplasmic	256	264	0.70
Transmembrane Helix	265	288	0.90
Cytoplasmic	289	434	0.93